Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs2112783 chr16:24812512 C/T 3.09E-6 119 46.27 29.23 31.37 KM Plot
THYM rs2121703 chr11:45762123 G/A 1.53E-6 115 47.93 23 28.43 KM Plot
THYM rs2123755 chr2:30878707 G/A 6.06E-5 114 31.07 54.97 35.13 KM Plot
THYM rs2123757 chr2:30757334 C/T 1.33E-8 119 36.4 50.1 33.13 KM Plot
THYM rs2126856 chr4:76322691 C/T 0.00012 117 38.83 42.9 60.13 KM Plot
THYM rs2161647 chr16:57503330 G/T 4.2E-9 119 42.82 33.85 12.63 KM Plot
THYM rs2166669 chr2:30834364 C/T 1.33E-8 119 33.13 50.1 36.4 KM Plot
THYM rs2167970 chr2:30757661 C/T 1.33E-8 119 36.4 50.1 33.13 KM Plot
THYM rs2179170 chr6:135142218 C/T 6.18E-5 119 38.13 50.1 23.7 KM Plot
THYM rs2182004 chr13:26629701 C/T 5.44E-6 115 13.75 50.47 38.58 KM Plot
THYM rs2183126 chr9:88692838 A/G 0.000188 119 16.28 35 44.58 KM Plot
THYM rs2188717 chr16:24730230 T/C 1.83E-9 117 12.63 28 46.43 KM Plot
THYM rs220158 chr21:43547788 T/C 0.000173 114 23.63 41.4 41.22 KM Plot
THYM rs2203192 chr6:117134124 A/T 5.68E-5 115 19.03 50.97 38.83 KM Plot
THYM rs2205210 chr14:80404941 G/T 1.14E-6 119 9.85 38.58 42.9 KM Plot